Comparison of methods for library construction and short read annotation of shellfish viral metagenomes

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' Comparison of methods for library construction and short read annotation of shellfish viral metagenomes' 의 참고문헌

  • Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens
    Lasken RS [2003]
  • Whole genome amplification from a single cell: implications for genetic analysis
    Zhang L [1992]
  • Viral genome sequencing by random priming methods
    Djikeng A [2008]
  • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    Meyer, F. [2008]
  • Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling
    Flygare S [2016]
  • Taxonomer: a fast and accurate metagenomics tool and its uses on clinical specimens
    Simmon KE [2016]
  • Single microbead SELEX for efficient ssDNA aptamer generation against botulinum neurotoxin
    Tok JB-H [2008]
  • Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
    Yu J [2017]
  • RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
    Zhao Y [2012]
  • Multiple displacement amplification to create a long-lasting source of DNA for genetic studies
    Lovmar L [2006]
  • Multiple displacement amplification of whole genomic DNA from urediospores of Puccinia striiformis f. sp. tritici
    Zhang R [2015]
  • Micromagnetic selection of aptamers in microfluidic channels
    Lou X [2009]
  • Metagenomic analysis of viruses from the bat fecal samples reveals many novel viruses in insectivorous bats in China
    Ge X [2012]
  • Metagenomic analyses: past and future trends
    Simon C [2011]
  • Kraken: ultrafast metagenomic sequence classification using exact alignments
    Wood DE [2014]
  • Impacts of the Three Gorges Dam on microbial structure and potential function
    Yan Q [2015]
  • Human airway epithelial cell culture to identify new respiratory viruses: coronavirus NL63 as a model
    Banach BS [2009]
  • High-throughput illumina strand-specific RNA sequencing library preparation
    Zhong S [2011]
  • GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array
    Suzuki S [2014]
  • Fast and sensitive protein alignment using DIAMOND
    Buchfink B [2015]
  • Evaluation of genome coverage and fidelity of multiple displacement amplification from single cells by SNP array
    Ling J [2009]
  • Environmental genome shotgun sequencing of the Sargasso Sea
    Venter JC [2004]
  • Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach
    Nakamura S [2009]
  • Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer
    Carter NP [1992]
  • Comparison of phi29-based whole genome amplification and whole transcriptome amplification in dengue virus
  • Community structure and metabolism through reconstruction of microbial genomes from the environment
    Tyson GW [2004]
  • CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
    Ounit R [2015]
  • Basic local alignment search tool
  • Aromatase deficiency in male and female siblings caused by a novel mutation and the physiological role of estrogens
    Morishima A [1995]
  • A procedure for highly specific, sensitive, and unbiased whole-genome amplification
    Pan X [2008]