연구동향 분석

Genome-wide identification and evolution of TC1/Mariner in the silkworm (Bombyx mori) genome

Li?Qin Xie Ping?Lan Wang Shen?Hua Jiang Ze Zhang Hua?Hao Zhang 2018년

논문상세정보
인용/피인용

' Genome-wide identification and evolution of TC1/Mariner in the silkworm (Bombyx mori) genome' 의 참고문헌

  • maT:a clade of transposons intermediate between mariner and Tc1
  • Transposition of Mboumar-9: identification of a new naturally active mariner-family transposon
  • The mariner transposons of animals: horizontally jumping genes
  • The mariner transposable element is widespread in insects
  • The genome sequence of silkworm, Bombyx mori
    Mita K [2004]
  • The genome of a lepidopteran model insect, the silkworm Bombyx mori
  • The PSIPRED protein structure prediction server
    McGuffin LJ [2000]
  • The HHpred interactive server for protein homology detection and structure prediction
    Soding J [2005]
  • Tc1 transposase of Caenorhabditis elegans is an endonuclease with a bipartite DNA binding domain
    Vos JC [1994]
  • SilkDB v2.0: a platform for silkworm (Bombyx mori) genome biology
    Duan J [2010]
  • Resident aliens: the TC1/Mariner superfamily of transposable elements
  • Relationships between transposable elements based upon the integrase-transposase domains: is there a common ancestor?
    Capy P [1996]
  • RGF-PCR: a technique to isolate different copies of a multi-copy gene
    Kumaresan G [2002]
  • Passport, a native Tc1 transposon from flatfish, is functionally active in vertebrate cells
    Clark KJ [2009]
  • Molecular structure of a somatically unstable transposable element in Drosophila
    Jacobson JW [1986]
  • Molecular diversity and phylogenetic analysis of mariner-like transposons in the genome of the silkworm Bombyx mori
    Kumaresan G [2004]
  • Mobile elements: drivers of genome evolution
    Kazazian HH [2004]
  • Mariner-like transposases are widespread and diverse in flowering plants
    Feschotte C [2002]
  • Mariner transposons as genetic tools in vertebrate cells
  • MUSCLE : multiple sequence alignment with high accuracy and high throughput
    Edgar RC [2004]
  • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    Tamura K [2007]
  • Insertion and excision of the transposable element mariner in Drosophila
    Bryan G [1990]
  • Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
    Novak P [2010]
  • Germ line and somatic instability of a white mutation in Drosophila mauritiana due to a transposable genetic element
    Haymer DS [1986]
  • Genome-wide screening and characterization of transposable elements and their distribution analysis in the silkworm, Bombyx mori
  • Genetic evidence for subunit interactions in the transposase of the transposable element mariner
    Lohe A [1996]
  • Fot1, a new family of fungal transposable elements
    Daboussi MJ [1992]
  • FastPCR: an in silico tool for fast primer and probe design and advanced sequence analysis
    Kalendar R [2017]
  • Expanding the diversity of the IS630-Tc1-mariner superfamily: discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons
    Shao H [2001]
  • Evidence for a transposon in Caenorhabditis elegans
    Emmons SW [1983]
  • EMBOSS: the European molecular biology open software suite
    Rice P [2000]
  • Dynamics and evolution of transposable elements
    Capy P [1997]
  • DNA binding activities of the Caenorhabditis elegans Tc3 transposase
    Colloms SD [1994]
  • Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome
    Zerjal T [2009]
  • Cloning and characterization of a mariner-like element in the silkworm, Bombyx mori
    Tomita S [1997]
  • Characterization and molecular phylogenetic analysis of mariner elements from wild and domesticated species of silkmoths
    Prasad MD [2002]
  • Burst expansion, distribution and diversification of MITEs in the silkworm genome
    Han MJ [2010]
  • Bmmarl: a basal lineage of the mariner family of transposable elements in the silkworm moth, Bombyx mori
  • Bmmar6, a second mori subfamily mariner transposon from the silkworm moth Bombyx mori
    Robertson H [2003]
  • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
  • Bacterial genetic methods to explore the biology of mariner transposons
    Lampe DJ [2010]
  • A unified classification system for eukaryotic transposable elements
    Wicker T [2007]
  • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    Kimura M [1980]
  • A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif
    Doak TG [1994]
  • A new basal subfamily of mariner elements in Ceratitis rosa and other tephritid flies
    Gomulski LM [2010]
  • A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons
  • A draft sequence for the genome of the domesticated silkworm (Bombyx mori)
    Xia Q [2004]