Genome-wide identification and characterization of the RIO atypical kinase family in plants

논문상세정보

' Genome-wide identification and characterization of the RIO atypical kinase family in plants' 의 참고문헌

  • agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
    Tian T [2017]
  • Yeast Rio1p is the founding member of a novel subfamily of protein serine kinases involved in the control of cell cycle progression
    Angermayr M [2002]
  • WoLF PSORT: protein localization predictor
    Horton P [2007]
  • WebLogo: a sequence logo generator
    Crooks GE [2004]
  • The protein kinase complement of the human genome
    Manning G [2002]
  • The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes
    Schafer T [2003]
  • The kinase activity of human Rio1 is required for final steps of cytoplasmic maturation of 40S subunits
    Widmann B [2012]
  • The ancient microbial RIO kinases
    LaRonde NA [2014]
  • The TIGR Rice Genome Annotation Resource: improvements and new features
    Ouyang S [2007]
  • The RIO kinases: an atypical protein kinase family required for ribosome biogenesis and cell cycle progression
  • The Pfam protein families database: towards a more sustainable future
    Finn RD [2016]
  • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    Thompson JD [1997]
  • The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
    Lamesch P [2012]
  • Structure and activity of the atypical serine kinase Rio1
  • Rio2p, an evolutionarily conserved, low abundant protein kinase essential for processing of 20 S Pre-rRNA in Saccharomyces cerevisiae
  • Rio1 promotes rDNA stability and downregulates RNA polymerase I to ensure rDNA segregation
  • Ribosome biogenesis in the yeast Saccharomyces cerevisiae
  • RIOK3-mediated phosphorylation of MDA5 interferes with its assembly and attenuates the innate immune response
    Takashima K [2015]
  • RIOK3 is an adaptor protein required for IRF3-mediated antiviral type I interferon production
    Feng J [2014]
  • RIOK3 interacts with caspase-10 and negatively regulates the NF-<TEX>${\kappa}B$</TEX> signaling pathway
    Shan J [2009]
  • RIO1, an extraordinary novel protein kinase
    Angermayr M [2002]
  • Processing of 20S prerRNA to 18S ribosomal RNA in yeast requires Rrp10p, an essential non-ribosomal cytoplasmic protein
    Vanrobays E [2001]
  • PlantCARE : a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
    Lescot M [2002]
  • Plant-specific features of ribosome biogenesis
    Weis BL [2015]
  • Phytozome: a comparative platform for green plant genomics
  • Phosphorylation of right open reading frame 2 (Rio2) protein kinase by polo-like kinase 1 regulates mitotic progression
    Liu T [2011]
  • PLEXdb: gene expression resources for plants and plant pathogens
    Dash S [2012]
  • PGDD: a database of gene and genome duplication in plants
    Lee TH [2012]
  • Open source clustering software
    de Hoon MJ [2004]
  • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    Guindon, S. [2010]
  • NCBI GEO: archive for functional genomics data sets-update
    Barrett T [2013]
  • MaizeGDB update: new tools, data and interface for the maize model organism database
    Andorf CM [2016]
  • MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets
    Kumar, S. [2016]
  • Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases
    Krupa A [2002]
  • Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae
    Vanrobays E [2003]
  • Inhibition of RNA synthesis by actinomycin D: characteristic dose-response of different RNA species
    Perry RP [1970]
  • Identification of seed proteins associated with resistance to pre-harvested aflatoxin contamination in peanut (Arachis hypogaea L)
    Wang T [2010]
  • Identification of polyubiquitin binding proteins involved in NF-<TEX>${\kappa}B$</TEX> signaling using protein arrays
    Fenner BJ [2009]
  • Identification and expression analysis of ribosome biogenesis factor co-orthologs in Solanum lycopersicum
    Simm S [2015]
  • Human RioK3 is a novel component of cytoplasmic pre-40S pre-ribosomal particles
    Baumas K [2012]
  • Guanine nucleotide depletion inhibits pre-ribosomal RNA synthesis and causes nucleolar disruption
    Huang M [2008]
  • Growth control and ribosome biogenesis
  • Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes
    Hruz T [2008]
  • GSDS 2.0: an upgraded gene feature visualization server
    Hu B [2015]
  • GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
    Zheng Q [2008]
  • Functional profiling of the Saccharomyces cerevisiae genome
    Giaever G [2002]
  • Flatworms have lost the right open reading frame kinase 3 gene during evolution
  • Evolution by gene duplication: an update
    Zhang J [2003]
  • Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes
  • Diversity, classification and function of the plant protein kinase superfamily
  • Distinct cytoplasmic maturation steps of 40S ribosomal subunit precursors require hRio2
    Zemp I [2009]
  • Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases
  • Co-expression tools for plant biology: opportunities for hypothesis generation and caveats
    Usadel B [2009]
  • Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice
    Gao Q [2012]
  • Chapter three-Eukaryotic ribosome assembly and nuclear export;International review of cell and molecular biology
    Nerurkar P [2015]
  • Bioinformatic exploration of RIO protein kinases of parasitic and free-living nematodes
  • Bioconductor: open software development for computational biology and bioinformatics
  • Atypical protein kinases of the RIO family in archaea
    Esser D [2013]
  • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
    Keane TM [2006]
  • Ancient horizontal transfer of transaldolaselike protein gene and its role in plant vascular development
    Yang Z [2015]
  • ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit
  • A family portrait of the RIO kinases
  • A dynamic gene expression atlas covering the entire life cycle of rice
    Wang L [2010]