연구동향 분석
박사

Assessment of fish biodiversity in Korean rivers using the environmental DNA metabarcoding technique = 한국하천에서의 환경DNA 메타바코딩 기법을 이용한 어류 생물다양성 평가

ALAM MD JOBAIDUL 2020년

논문상세정보
인용/피인용
' Assessment of fish biodiversity in Korean rivers using the environmental DNA metabarcoding technique = 한국하천에서의 환경DNA 메타바코딩 기법을 이용한 어류 생물다양성 평가' 의 주제별 논문영향력
논문영향력 선정 방법
논문영향력 요약
주제
  • Korea
  • MiFish
  • biodiversity
  • eDNA
  • metabarcoding
  • next-generation sequencing
동일주제 총논문수 논문피인용 총횟수 주제별 논문영향력의 평균
2,625 0

0.0%

' Assessment of fish biodiversity in Korean rivers using the environmental DNA metabarcoding technique = 한국하천에서의 환경DNA 메타바코딩 기법을 이용한 어류 생물다양성 평가' 의 참고문헌

  • Yamamoto, S., Minami, K., Fukaya, K., Takahashi, K., Sawada, H., Murakami, H., Tsuji, S., Hashizume, H., Kubonaga, S., Horiuchi, T., 2016. Environmental DNA as a ‘snapshot’of fish distribution: A case study of Japanese jack mackerel in Maizuru Bay, Sea of Japan. PLoS One 11, e0149786.
  • Wilcox, T.M., McKelvey, K.S., Young, M.K., Sepulveda, A.J., Shepard, B.B., Jane, S.F., Whiteley, A.R., Lowe, W.H., Schwartz, M.K., 2016.
    [2016]
  • What is biodiversity ?
    [2008]
  • Von Brandt 's fish catching methods of the world
    [2008]
  • Validation of eDNA surveillance sensitivity for detection of Asian carps in controlled and field experiments
    8 , e58316 . [2013]
  • Using environmental DNA to estimate the distribution of an invasive fish species in ponds
    8 , e56584 [2013]
  • Using environmental DNA to detect an endangered crayfish Cambaroides japonicus in streams
    8 , 231-234 [2016]
  • Using eDNA to detect the distribution and density of invasive crayfish in the Honghe-Hani rice terrace World Heritage site
    12 , e0177724 [2017]
  • Using SPMDs for monitoring hydrophobic organic compounds in urban river water in Korea compared with using conventional water grab samples
    [2014]
  • Using Environmental DNA for Invasive Species Surveillance and Monitoring
    131- 142 [2016]
  • Universal primer cocktails for fish DNA barcoding
    7 , 544-548 [2007]
  • Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis. Biological Conservation 194, 209-216.
  • Two genetic clades in populations of Paramisgurnus dabryanus , an exotic invader in ehime prefecture
    57 , 125-134 . [2010]
  • Transport distance of invertebrate environmental DNA in a natural river
    9 , e88786 [2014]
  • Towards sustainability in world fisheries
    418 , 689 . [2002]
  • Three fishes in one : cryptic species in an Amazonian floodplain forest specialist
    102 , 391-403 [2011]
  • The value of the world 's ecosystem services and natural capital
    387 , 253 [1997]
  • The use of environmental DNA of fishes as an efficient method of determining habitat connectivity
    62 , 147-153 [2016]
  • The measurement of marine species diversity , with an application to the benthic fauna of the Norwegian continental shelf
    250 , 23-49 [2000]
  • The influence of organisms on the composition of seawater
    2 , 26-77 [1963]
  • The guild approach to categorizing estuarine fish assemblages : a global review
    8 , 241-268 [2007]
  • The fish fauna of mountain streams in South Korean national parks and its significance to conservation of regional freshwater fish biodiversity
    114 , 115-126 [2003]
  • The distribution and diversity of freshwater fishes in Korean Peninsula
    51 , 71-85 [2018]
  • The detection of aquatic animal species using environmental DNA–a review of eDNA as a survey tool in ecology
    51 , 1450-1459 [2014]
  • The current status of the distribution of introduced fish in large river systems of South Korea
    87 , 319-328 [2002]
  • Taxonomy and stream ecology—the benefits of genus-and species-level identifications
    20 , 287-298 [2001]
  • Taxonomy : impediment or expedient ?
    [2004]
  • Taxonomic sufficiency : the influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates
    16 , 45-69 [2008]
  • Surveillance of fish species composition using environmental DNA
    13 , 193-197 [2012]
  • Studies on disease of catfish , Silurus asotus , in Korea . III . Edwardsiella ictaluri infection
    7 , 105-112 [1994]
  • Stream health after urbanization 1
    36 , 1149-1160 [2000]
  • Statistical approaches to account for false-positive errors in environmental DNA samples
    16 , 673-685 . [2016]
  • Standard methods for sampling North American freshwater fishes
    [2009]
  • Stability of manipulated plasmid DNA in aquatic environments
    11 , 129-135 [1996]
  • Spring phytoplankton blooms in the absence of vertical waterColumn stratification
    360 , 59 . [1992]
  • Species detection using environmental DNA from water samples
    4 , 423- 425 [2008]
  • Speciation in Freshwater Fishes
    45 , 621-651 [2014]
  • Spatial and temporal analysis of transoceanic shipping vectors to the Great Lakes
    [2003]
  • Sightunseen ” detection of rare aquatic species using environmental DNA .
    4 , 150-157 .
  • Revenga,C., Brunner, J., Henninger, N., Kassem, K., Payne, R., 2000. Freshwater Systems. World Resources Institute Washington, DC.
    [2000]
  • Responsible fisheries in the marine ecosystem
    58 , 255-265 [2002]
  • Reproductive ecology and host utilization of four sympatric bitterling ( Acheilognathinae ,Cyprinidae ) in a lowland reach of the Harai River in Mie
    78 , 37-55 [2007]
  • Red Data Book of endangered fishes in Korea
    [2011]
  • Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing
    [2017]
  • Quantification of damage in DNA recovered from highly degraded samples–aCase study on DNA in faeces
    3 , 11 [2006]
  • Prospects for sustaining freshwater biodiversity in the 21stCentury : linking ecosystem structure and function
    2 , 422-430 [2010]
  • Plan of implementation of the World Summit on Sustainable Development
    [2002]
  • Phytoplankton blooms in the Huon Estuary , Tasmania : top-down or bottom-upControl ?
    30 , 735-753 . [2008]
  • Persistence of DNA in carcasses , slime and avian feces may affect interpretation of environmental DNA data
    9 , e113346 . [2014]
  • Nevers, M.B., Byappanahalli, M.N., Morris, C.C., Shively, D., Przybyla- Kelly, K., Spoljaric, A.M., Dickey, J., Roseman, E.F., 2018.
    [2018]
  • Monitoring endangered freshwater biodiversity using environmental DNA
    21 , 2565-2573
  • Molecular detection of vertebrates in stream water : a demonstration using Rocky Mountain tailed frogs and Idaho giant salamanders
    6 , e22746 . [2011]
  • Miya, M., Sato, Y., Fukunaga, T., Sado, T., Poulsen, J.Y., Sato, K., Minamoto, T., Yamamoto, S., Yamanaka, H., Araki, H., 2015a. MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. Royal Society open science 2, 150088.
  • MitoFish and MiFish Pipeline : A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
    35 , 1553-1555 [2018]
  • Management for Improvement in Water Quality and Change of Fish Assemblage in Urban Dong Stream with Input of Seawater
    27 , 253-261 [2015]
  • MEGA7 : molecular evolutionary genetics analysis version 7.0 for bigger datasets
    33 , 1870-1874 [2016]
  • M. , Iwasaki , W. , 2015b . MiFish , a set of universal PCR primers for metabarcoding environmental DNA from
    than
  • Loss of biodiversity in aquatic ecosystems : evidence from fish faunas
    [1992]
  • Li, Y., Evans, N.T., Renshaw, M.A., Jerde, C.L., Olds, B.P., Shogren, A.J., Deiner, K., Lodge, D.M., Lamberti, G.A., Pfrender, M.E., 2018.
    [2018]
  • Length‐weight relationships for 18 freshwater fish species from the Nakdong River in South Korea
    31 , 576-577 [2015]
  • Isolation and characterization of polymorphic microsatellite markers for the endangered Korean freshwater fish Hemibarbus mylodon
    7 , 516- 518 [2007]
  • Investigating the potential use of environmental DNA ( eDNA ) for genetic monitoring of marine mammals
    7 , e41781 [2012]
  • Invasive species are a leading cause of animal extinctions
    20 , 110 [2005]
  • Influence of stream bottom substrate on retention and transport of vertebrate environmental DNA
    50 , 8770-8779 [2016]
  • Increased accuracy of species lists developed for alpine lakes using morphology and cytochrome oxidase I for identification of specimens
    13 , 820-831 [2013]
  • Improved detection of an alien invasive species through environmental DNA barcoding : the example of the American bullfrog Lithobates catesbeianus
    49 , 953-959 [2012]
  • Importance of fish biodiversity for the management of fisheries and ecosystems
    90 , 6-8 [2008]
  • Illustrated encyclopedia of fauna and flora of Korea
    Vol . 37Seoul ( in Korean [1997]
  • Illustrated book of Korean fishes
    [2005]
  • Identification and morphometric descriptions of four dominant families of larval fishes in the estuary of Marudu Bay , Sabah , East Malaysia
    15 , 1262-1268 [2016]
  • Hydroacoustics as a tool to examine the effects of Marine Protected Areas and habitat type on marine fish communities
    8 , 47 [2018]
  • Hubert, N., Meyer, C.P., Bruggemann, H.J., Guerin, F., Komeno, R.J., Espiau, B., Causse, R., Williams, J.T., Planes, S., 2012. Cryptic diversity in Indo- Pacific coral-reef fishes revealed by DNA-barcoding provides new support to the centre-of-overlap hypothesis. PloS one 7, e28987.
  • Have fishes had their chips ? The dilemma of threatened fishes
    43 , 1-27 . [1995]
  • Harnessing DNA to improve environmental management
    344 , 1455-1456 [2014]
  • Global biodiversity scenarios for the year 2100. science 287
    [2000]
  • Getting started with PRIMER v7
    [2015]
  • Genetic and manual survey methods yield different and complementary views of an ecosystem
    3 , 283 [2017]
  • Freshwater fishes of Korea
    [2002]
  • Freshwater fisheries assessment using environmental DNA : A primer on the method , its potential , and shortcomings as a conservation tool
    [2017]
  • Freshwater biodiversity in crisis .
    [2000]
  • Fragmentation and flow regulation of the world 's large river systems
    308 , 405- 408 [2005]
  • Fishery stability , local extinctions , and shifts in community structure in skates
    14 , 283-293 . [2000]
  • Fisheries techniques
    [1996]
  • Fish Biodiversity Monitoring in Rivers of South Korea , The Biodiversity Observation Network in the Asia-Pacific Region
    [2012]
  • Extinction rates of North American freshwater fauna
    13 , 1220-1222 [1999]
  • Estimation of the fate of dissolved DNA in thermally stratified lake water from the stability of exogenous plasmid DNA
    26 , 95-102 [2001]
  • Estimation of fish biomass using environmental DNA
    7 , e35868 [2012]
  • Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples
    70 , 1123-1130
  • Estimating fish alpha-and beta-diversity along a small stream with environmental DNA metabarcoding. Metabarcoding and Metagenomics 2, e24262.
  • Environmental DNA reveals that rivers are conveyer belts of biodiversity information
    7 , 12544 [2016]
  • Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation
    8 , 10361 [2018]
  • Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
    7 , 40368 [2017]
  • Environmental DNA from seawater samples correlate with trawl catches of subarctic , deepwater fishes
    11 , e0165252 . [2016]
  • Environmental DNA for wildlife biology and biodiversity monitoring
    29 , 358-367 [2014]
  • Environmental DNA for freshwater fish monitoring : insights for conservation within a protected area
    6 , e4486 [2018]
  • Environmental DNA analysis for estimating the abundance and biomass of stream fish
    62 , 30-39 [2017]
  • Environmental DNA (eDNA): A tool for quantifying the abundant but elusive round goby (Neogobius melanostomus). PloS one 13, e0191720.
  • Environmental DNA ( eDNA ) metabarcoding assays to detect invasive invertebrate species in the Great Lakes .
    12 , e0177643 [2017]
  • Engineered polymerases amplify the potential of ancient DNA
    26 , 285-287 [2008]
  • Effects of urbanization on the distribution and abundance of amphibians and invasive species in southern California streams
    19 , 1894-1907 [2005]
  • Effects of biodiversity on ecosystem functioning : a consensus of current knowledge
    75 , 3-35 . [2005]
  • Ecological diversity and its measurement
    [1988]
  • EFFECT OF SUYEONG RIVER WATER ON THE WATER POLLUTION OF SUYEONG BAY
    12 , 267-276 [1979]
  • Droplet digital polymerase chain reaction ( PCR ) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species
    49 , 5601-5608 [2015]
  • Divergence of ovipositor length and egg shape in a brood parasitic bitterling fish through the use of different mussel hosts
    25 , 566-573 [2012]
  • Distribution status and habitat characteristics of the endangered freshwater fish , Microphysogobio rapidus ( Cyprinidae )Animal Cells and Systems 21
    [2017]
  • Detection of a diverse marine fish fauna using environmental DNA from seawater samples
    7 , e41732
  • Detection of Asian carp DNA as part of a Great Lakes basin-wide surveillance program
    70 , 522-526 [2013]
  • Detection and persistence of environmental DNA from an invasive , terrestrial mammal
    8 , 688-695 [2018]
  • Declines in the numbers of amateur and professional taxonomists : implications for conservation
    5 , 245-249 [2002]
  • DNA barcoding for ecologists
    24 , 110-117 [2009]
  • DNA barcoding : a taxonomic point of view
    30 , 174-181 [2011]
  • Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
    197 , 131-138 [2016]
  • Communication From the Commission to the Council , the European Parliament , the European Economic and Social Committee , and the Committee of the Regions : A Mid-Term Assessment of Implementing the EC Biodiversity Action Plan
    12 , 108-120 [2009]
  • Collapse and recovery of marine fishes
    406 , 882 [2000]
  • Changes in nutrient structure of river-dominated coastal waters : stoichiometric nutrient balance and its consequences
    [1995]
  • Biodiversity loss threatens human well-being
    4 , e277 . [2006]
  • Biocomplexity and fisheries sustainability
    100 , 6564-6568 [2003]
  • B. , 2005 . Biodiversity : millennium ecosystem assessment : current state and trends : findings of the condition and trends working group .
  • Assessing macroinvertebrate biodiversity in freshwater ecosystems : advances and challenges in DNA-based approaches
    85 , 319-340 [2010]
  • Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary
    12 , e0175186 [2017]
  • Applying DNA barcoding in benthology : the state of the science
    30 , 122-124 [2011]
  • Application of environmental DNA for inventory and monitoring of aquatic species
  • Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity
    8 , 14087 [2017]
  • An eDNA assay for Irish Petromyzon marinus and Salmo trutta and field validation in running water
    87 , 1254-1262 [2015]
  • An Introduction to Python and computer programming , An Introduction to Python and Computer Programming
    [2015]
  • Age and Growth of Barbel Steed Hemibarbus labeo in Goe-san Lake in Korea
    15 , 353-359 [2012]
  • Acheilognathus melanogaster , a senior synonym of A moriokae , with a revision of the genera of the subfamily Acheilogathinae ( Cypriniformes , Cyprinidae )
    14 , 199-213 [1988]
  • Abstracts of the 4 th International Conference on Environmental Health Science , 27–28 October 2011 , Incheon Korea
    3 , 1-88 [2011]
  • A study on the water quality characteristics of the Suyeong river .
    [1997]
  • A review on status , potentials , threats and challenges of the fish biodiversity of West Bengal
    [2014]
  • A review of the research on introduced freshwater fishes : new perspectives , the need for research , and management implications
    6 , 99-108 [2010]
  • A novel environmental DNA approach to quantify the cryptic invasion of non‐native genotypes
    16 , 415-422 . [2016]
  • A basin‐scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers : a case study of giant salamanders in Japan
    52 , 358-365 [2015]
  • A Video Monitoring System to Evaluate Ocean Recreational Fishing Effort in Astoria
    [2017]
  • A Study on the Distribution of Nonylphenol in Estuaries in Busan , Korea . J. Fac .
    58 , 313-318 [2013]
  • A Review of the Spined Loaches , Family Cobitidae ( Cypriniformes ) in Korea Korean Journal of Ichthyology
    21 , 7-28 [2009]
  • 2017. eDNA for detection of five highly invasive molluscs . A case study in urban rivers from the Iberian Peninsula
    12 , e0188126
  • 2015. eDNA and specific primers for early detection of invasive species–a case study on the bivalve Rangia cuneata , currently spreading in Europe
    112 , 48-55
  • 2011. ecoPrimers : inference of new DNA barcode markers from whole genome sequence analysis
    39 , e145-e145