연구동향 분석
박사

Identification and Characterization of Protein Tyrosine Nitration using Mass Spectrometry

강정원 2016년

논문상세정보
인용/피인용
' Identification and Characterization of Protein Tyrosine Nitration using Mass Spectrometry' 의 주제별 논문영향력
논문영향력 선정 방법
논문영향력 요약
주제
  • Mass spectrometry
  • Nitroproteomics
  • Protein tyrosine nitration
동일주제 총논문수 논문피인용 총횟수 주제별 논문영향력의 평균
53 0

0.0%

' Identification and Characterization of Protein Tyrosine Nitration using Mass Spectrometry' 의 참고문헌

  • Zhang, Q., Qian, W. J., Knyushko, T. V., Clauss, T. R., et al., A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples. Journal of proteome research 2007, 6, 2257-2268.
  • Wang, X. L., Rainwater, D. L., Leone, A., Mahaney, M. C., Effects of diabetes on plasma nitrotyrosine levels. Diabetic medicine: a journal of the British Diabetic Association 2004, 21, 577-580.
  • Vacic, V., Iakoucheva, L. M., Radivojac, P., Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. Bioinformatics 2006, 22, 1536-1537.
  • Turko, I. V., Murad, F., Protein nitration in cardiovascular diseases. Pharmacological reviews 2002, 54, 619-634.
  • Turko, I. V., Li, L., Aulak, K. S., Stuehr, D. J., et al., Protein tyrosine nitration in the mitochondria from diabetic mouse heart. Implications to dysfunctional mitochondria in diabetes. The Journal of biological chemistry 2003, 278, 33972-33977.
  • Thompson, J. D., Muller, A., Waterhouse, A., Procter, J., et al., MACSIMS: multiple alignment of complete sequences information management system. BMC bioinformatics 2006, 7, 318.
  • Thomas, D. D., Espey, M. G., Vitek, M. P., Miranda, K. M., Wink, D. A., Protein nitration is mediated by heme and free metals through Fenton-type chemistry: an alternative to the NO/O2-reaction. Proceedings of the National Academy of Sciences of the United States of America 2002, 99, 12691-12696.
  • Sultana, R., Poon, H. F., Cai, J., Pierce, W. M., et al., Identification of nitrated proteins in Alzheimer's disease brain using a redox proteomics approach. Neurobiology of disease 2006, 22, 76-87.
  • Souza, J. M., Peluffo, G., Radi, R., Protein tyrosine nitration--functional alteration or just a biomarker? Free radical biology & medicine 2008, 45, 357-366.
  • Souza, J. M., Daikhin, E., Yudkoff, M., Raman, C. S., Ischiropoulos, H., Factors determining the selectivity of protein tyrosine nitration. Archives of biochemistry and biophysics 1999, 371, 169-178.
  • Shi, W. Q., Cai, H., Xu, D. D., Su, X. Y., et al., Tyrosine phosphorylation/ dephosphorylation regulates peroxynitrite-mediated peptide nitration. Regulatory peptides 2007, 144, 1-5.
  • Sacksteder, C. A., Qian, W. J., Knyushko, T. V., Wang, H., et al., Endogenously nitrated proteins in mouse brain: links to neurodegenerative disease. Biochemistry 2006, 45, 8009- 8022.
  • Rubbo, H., Radi, R., Protein and lipid nitration: role in redox signaling and injury. Biochimica et biophysica acta 2008, 1780, 1318-1324.
  • Radi, R., Nitric oxide, oxidants, and protein tyrosine nitration. Proceedings of the National Academy of Sciences of the United States of America 2004, 101, 4003-4008.
  • Radi, R., Beckman, J. S., Bush, K. M., Freeman, B. A., Peroxynitrite oxidation of sulfhydryls. The cytotoxic potential of superoxide and nitric oxide. The Journal of biological chemistry 1991, 266, 4244-4250.
  • Quijano, C., Alvarez, B., Gatti, R. M., Augusto, O., Radi, R., Pathways of peroxynitrite oxidation of thiol groups. The Biochemical journal 1997, 322 (Pt 1), 167-173.
  • Pieper, U., Eswar, N., Webb, B. M., Eramian, D., et al., MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic acids research 2009, 37, D347-354.
  • Nikov, G., Bhat, V., Wishnok, J. S., Tannenbaum, S. R., Analysis of nitrated proteins by nitrotyrosine-specific affinity probes and mass spectrometry. Analytical biochemistry 2003, 320, 214-222.
  • McGuffin, L. J., Bryson, K., Jones, D. T., The PSIPRED protein structure prediction server. Bioinformatics 2000, 16, 404-405.
  • Lee, J. R., Lee, S. J., Kim, T. W., Kim, J. K., et al., Chemical approach for specific enrichment and mass analysis of nitrated peptides. Analytical chemistry 2009, 81, 6620-6626.
  • Lee, J. R., Kim, J. K., Lee, S. J., Kim, K. P., Role of protein tyrosine nitration in neurodegenerative diseases and atherosclerosis. Archives of pharmacal research 2009, 32, 1109-1118.
  • Kong, S. K., Yim, M. B., Stadtman, E. R., Chock, P. B., Peroxynitrite disables the tyrosine phosphorylation regulatory mechanism: Lymphocyte-specific tyrosine kinase fails to phosphorylate nitrated cdc2(6-20)NH2 peptide. Proceedings of the National Academy of Sciences of the United States of America 1996, 93, 3377-3382.
  • Kim, J. K., Lee, J. R., Kang, J. W., Lee, S. J., et al., Selective enrichment and mass spectrometric identification of nitrated peptides using fluorinated carbon tags. Analytical chemistry 2011, 83, 157-163.
  • Ischiropoulos, H., al-Mehdi, A. B., Peroxynitrite-mediated oxidative protein modifications. FEBS letters 1995, 364, 279-282.
  • Ischiropoulos, H., Biological selectivity and functional aspects of protein tyrosine nitration. Biochemical and biophysical research communications 2003, 305, 776-783.
  • Halliwell, B., What nitrates tyrosine? Is nitrotyrosine specific as a biomarker of peroxynitrite formation in vivo? FEBS letters 1997, 411, 157-160.
  • Greenacre, S. A., Ischiropoulos, H., Tyrosine nitration: localisation, quantification, consequences for protein function and signal transduction. Free radical research 2001, 34, 541-581.
  • Gorg, B., Qvartskhava, N., Bidmon, H. J., Palomero-Gallagher, N., et al., Oxidative stress markers in the brain of patients with cirrhosis and hepatic encephalopathy. Hepatology 2010, 52, 256-265.
  • Ghesquiere, B., Colaert, N., Helsens, K., Dejager, L., et al., In vitro and in vivo proteinbound tyrosine nitration characterized by diagonal chromatography. Molecular & cellular proteomics: MCP 2009, 8, 2642-2652.
  • Frith, M. C., Saunders, N. F., Kobe, B., Bailey, T. L., Discovering sequence motifs with arbitrary insertions and deletions. PLoS computational biology 2008, 4, e1000071.
  • Elfering, S. L., Haynes, V. L., Traaseth, N. J., Ettl, A., Giulivi, C., Aspects, mechanism, and biological relevance of mitochondrial protein nitration sustained by mitochondrial nitric oxide synthase. American journal of physiology. Heart and circulatory physiology 2004, 286, H22-29.
  • DeLano, W. L., The PyMOL Molecular Graphics System. DeLano Scientific 2002.
  • Crooks, G. E., Hon, G., Chandonia, J. M., Brenner, S. E., WebLogo: a sequence logo generator. Genome research 2004, 14, 1188-1190.
  • Cole, C., Barber, J. D., Barton, G. J., The Jpred 3 secondary structure prediction server. Nucleic acids research 2008, 36, W197-201.
  • Chou, P. Y., Fasman, G. D., Conformational parameters for amino acids in helical, betasheet, and random coil regions calculated from proteins. Biochemistry 1974, 13, 211-222.
  • Castegna, A., Thongboonkerd, V., Klein, J. B., Lynn, B., et al., Proteomic identification of nitrated proteins in Alzheimer's disease brain. Journal of neurochemistry 2003, 85, 1394- 1401.
  • Bian, K., Gao, Z., Weisbrodt, N., Murad, F., The nature of heme/iron-induced protein tyrosine nitration. Proceedings of the National Academy of Sciences of the United States of America 2003, 100, 5712-5717.
  • Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., et al., The Protein Data Bank. Nucleic acids research 2000, 28, 235-242.
  • Bartesaghi, S., Ferrer-Sueta, G., Peluffo, G., Valez, V., et al., Protein tyrosine nitration in hydrophilic and hydrophobic environments. Amino acids 2007, 32, 501-515.
  • Aulak, K. S., Koeck, T., Crabb, J. W., Stuehr, D. J., Dynamics of protein nitration in cells and mitochondria. American journal of physiology. Heart and circulatory physiology 2004, 286, H30-38.
  • Alvarez, B., Rubbo, H., Kirk, M., Barnes, S., et al., Peroxynitrite-dependent tryptophan nitration. Chemical research in toxicology 1996, 9, 390-396.
  • Abello, N., Kerstjens, H. A., Postma, D. S., Bischoff, R., Protein tyrosine nitration: selectivity, physicochemical and biological consequences, denitration, and proteomics methods for the identification of tyrosine-nitrated proteins. Journal of proteome research 2009, 8, 3222-3238.
  • Abello, N., Barroso, B., Kerstjens, H. A., Postma, D. S., Bischoff, R., Chemical labeling and enrichment of nitrotyrosine-containing peptides. Talanta 2010, 80, 1503-1512.