박사

Characterization of Lipid Phosphate Phosphatase Genes and in Planta Expressed Orphan Genes in the Rice Blast Fungus : 벼 도열병균 인지질 탈인산화 효소 유전자와 식물체내 발현 orphan 유전자의 특성 구명

논문상세정보
' Characterization of Lipid Phosphate Phosphatase Genes and in Planta Expressed Orphan Genes in the Rice Blast Fungus : 벼 도열병균 인지질 탈인산화 효소 유전자와 식물체내 발현 orphan 유전자의 특성 구명' 의 주제별 논문영향력
논문영향력 선정 방법
논문영향력 요약
주제
  • diacylglycerol
  • fungal development and pathogenicity
  • lipid phosphate phosphatase
  • magnaporthe oryzae
  • orphan gene
동일주제 총논문수 논문피인용 총횟수 주제별 논문영향력의 평균
53 0

0.0%

' Characterization of Lipid Phosphate Phosphatase Genes and in Planta Expressed Orphan Genes in the Rice Blast Fungus : 벼 도열병균 인지질 탈인산화 효소 유전자와 식물체내 발현 orphan 유전자의 특성 구명' 의 참고문헌

  • Yu, J., Hu, S. N., Wang, J., Wong, G. K. S., Li, S. G., Liu, B., Deng, Y. J., Dai,L., Zhou, Y., Zhang, X. Q., Cao, M. L., Liu, J., Sun, J. D., Tang, J. B.,Chen, Y. J., Huang, X. B., Lin, W., Ye, C., Tong, W., Cong, L. J., Geng,J. N., Han, Y. J., Li, L., Li, W., Hu, G. Q., Huang, X. G., Li, W. J., Li,J., Liu, Z. W., Li, L., Liu, J. P., Qi, Q. H., Liu, J. S., Li, L., Li, T., Wang,X. G., Lu, H., Wu, T. T., Zhu, M., Ni, P. X., Han, H., Dong, W., Ren, X. Y., Feng, X. L., Cui, P., Li, X. R., Wang, H., Xu, X., Zhai, W. X., Xu,Z., Zhang, J. S., He, S. J., Zhang, J. G., Xu, J. C., Zhang, K. L., Zheng,X. W., Dong, J. H., Zeng, W. Y., Tao, L., Ye, J., Tan, J., Ren, X. D.,Chen, X. W., He, J., Liu, D. F., Tian, W., Tian, C. G., Xia, H. G., Bao,Q. Y., Li, G., Gao, H., Cao, T., Wang, J., Zhao, W. M., Li, P., Chen, W.,Wang, X. D., Zhang, Y., Hu, J. F., Wang, J., Liu, S., Yang, J., Zhang, G. Y., Xiong, Y. Q., Li, Z. J., Mao, L., Zhou, C. S., Zhu, Z., Chen, R. S.,Hao, B. L., Zheng, W. M., Chen, S. Y., Guo, W., Li, G. J., Liu, S. Q.,Tao, M., Wang, J., Zhu, L. H., Yuan, L. P. and Yang, H. M. 2002. Adraft sequence of the rice genome (Oryza sativa L. ssp indica). Science95296:79-92.
  • Yu, J. H., Hamari, Z., Han, K. H., Seo, J. A., Reyes-Dominguez, Y. andScazzocchio, C. 2004. Double-joint PCR: a PCR-based molecular toolfor gene manipulations in filamentous fungi. Fungal Genet. Biol.41:973-981.
  • Yang, Z. F. and Huang, J. L. 2011. De novo origin of new genes with intronsin Plasmodium vivax. FEBS Lett. 585:641-644.
  • Wilson, R. A. and Talbot, N. J. 2009. Under pressure: investigating the biology94of plant infection by Magnaporthe oryzae. Nature Rev. Microbiol.7:185-195.
  • Valent, B., Farrall, L., and Chumley, F.G. (1991) Magnaporthe grisea genesfor pathogenicity and virulence identified through a series of backcrosses.Genetics 127: 87-101.
  • Valent, B. and Chumley, F. G. 1991. Molecular genetic analysis of the riceblast fungus, Magnaporthe grisea. Annu. Rev. Phytopathol. 29:443-467.
  • Tautz, D. and Domazet-Loso, T. 2011. The evolutionary origin of orphangenes. Nature Rev. Genet. 12:692-702.
  • Talbot, N.J. (2003) On the trail of a cereal killer: exploring the biology ofMagnaporthe grisea. Annu Rev Microbiol 57: 177-202.
  • Talbot, N. J., Ebbole, D. J. and Hamer, J. E. 1993. Identification andcharacterization of MPG1, a gene involved in pathogenicity from therice blast fungus Magnaporthe grisea. Plant Cell 5:1575-1590.
  • Siepel, A. 2009. Darwinian alchemy: Human genes from noncoding DNA.Genome Res. 19:1693-1695.
  • Sambrook J. and Russell D. W. (2001) Molecular cloning: a laboratory manual.Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • Pruitt, K. D., Tatusova, T. and Maglott, D. R. 2007. NCBI reference sequences93(RefSeq): a curated non-redundant sequence database of genomes,transcripts and proteins. Nucleic Acids Res. 35:D61-D65.
  • Pozzoli, U., Menozzi, G., Fumagalli, M., Cereda, M., Comi, G. P., Cagliani, R.,Bresolin, N. and Sironi, M. 2008. Both selective and neutral processesdrive GC content evolution in the human genome. BMC Evol. Biol.8:99.
  • Park, S. Y., Chi, M. H., Milgroom, M. G., Kim, H., Han, S. S., Kang, S. andLee, Y. H. 2010. Genetic stability of Magnaporthe oryzae duringsuccessive passages through rice plants and on artificial medium. PlantPathol. J. 26:313-320.
  • Palmieri, N., Kosiol, C. and Schlotterer, C. 2014. The life cycle of Drosophilaorphan genes. eLife 3:e01311.
  • Neme, R. and Tautz, D. 2013. Phylogenetic patterns of emergence of newgenes support a model of frequent de novo evolution. BMC Genomics14:117.
  • Martin, R., Moran, G. P., Jacobsen, I. D., Heyken, A., Domey, J., Sullivan, D.J., Kurzai, O. and Hube, B. 2011. The Candida albicans-specific geneEED1 encodes a key regulator of hyphal extension. PLoS ONE6(4):e18394.
  • Lynch, M. and Katju, V. 2004. The altered evolutionary trajectories of geneduplicates. Trends Genet. 20:544-549.
  • Li, L., Ding, S. L., Sharon, A., Orbach, M. and Xu, J. R. 2007. Mir1 is highlyupregulated and localized to nuclei during infectious hyphal growth inthe rice blast fungus. Mol. Plant-Microbe Interact. 20:448-458.
  • Li, D., Dong, Y., Jiang, Y., Jiang, H. F., Cai, J. and Wang, W. 2010b. A de novooriginated gene depresses budding yeast mating pathway and isrepressed by the protein encoded by its antisense strand. Cell Res.20:408-420.
  • Li, C. Y., Zhang, Y., Wang, Z. B., Zhang, Y., Cao, C. M., Zhang, P. W., Lu, S.J., Li, X. M., Yu, Q., Zheng, X. F., Du, Q., Uhl, G. R., Liu, Q. R. andWei, L. P. 2010a. A human-specific de novo protein-coding genegssociated with human brain functions. PLoS Comput. Biol.6(3):e1000734.
  • Levine, M. T., Jones, C. D., Kern, A. D., Lindfors, H. A. and Begun, D. J.2006. Novel genes derived from noncoding DNA in Drosophilamelanogaster are frequently X-linked and exhibit testis-biasedexpression. Proc. Natl. Acad. Sci. U. S. A. 103:9935-9939.
  • Knowles, D. G. and McLysaght, A. 2009. Recent de novo origin of humanprotein-coding genes. Genome Res. 19:1752-1759.
  • Kim, S., Park, J., Park, S.Y., Mitchell, T.K., and Lee, Y.H. (2010)Identification and analysis of in planta expressed genes of Magnaportheoryzae. BMC Genomics 11: 104.
  • Kim, H. J., Han, J. H., Kim, K. S. and Lee, Y. H. 2014. Comparativefunctional analysis of the velvet gene family reveals unique roles infungal development and pathogenicity in Magnaporthe oryzae. FungalGenet. Biol. 66:33-43.
  • Khalturin, K., Hemmrich, G., Fraune, S., Augustin, R. and Bosch, T. C. G.2009. More than just orphans: are taxonomically-restricted genesimportant in evolution? Trends Genet. 25:404-413.
  • Kaessmann, H. 2010. Origins, evolution, and phenotypic impact of new genes.Genome Res. 20:1313-1326.
  • Jansen, R. and Gerstein, M. 2000. Analysis of the yeast transcriptome withstructural and functional categories: characterizing highly expressedproteins. Nucleic Acids Res. 28:1481-1488.
  • Heinen, T. J. A. J., Staubach, F., Haming, D. and Tautz, D. 2009. Emergence ofa new gene from an intergenic region. Curr. Biol. 19:1527-1531.
  • Goff, S. A. 2005. A draft sequence of the rice genome (Oryza sativa L. ssp.japonica). Science 309:879-879.
  • Ekman, D. and Elofsson, A. 2010. Identifying and quantifying orphan proteinsequences in Fungi. J. Mol. Biol. 396:396-405.
  • Donoghue, M. T. A., Keshavaiah, C., Swamidatta, S. H. and Spillane, C. 2011.Evolutionary origins of Brassicaceae specific genes in Arabidopsis90thaliana. BMC Evol. Biol. 11:47.
  • Domazet-Loso, T. and Tautz, D. 2003. An evolutionary analysis of orphangenes in Drosophila. Genome Res. 13:2213-2219.
  • Ding, Y., Zhao, L., Yang, S. A., Jiang, Y., Chen, Y. A., Zhao, R. P., Zhang, Y.,Zhang, G. J., Dong, Y., Yu, H. J., Zhou, Q. and Wang, W. 2010. Ayoung Drosophila duplicate gene plays essential roles inspermatogenesis by regulating several Y- linked male fertility genes.PLoS Genet. 6(12):e1001255.
  • Dean, R. A., Talbot, N. J., Ebbole, D. J., Farman, M. L., Mitchell, T. K.,Orbach, M. J., Thon, M., Kulkarni, R., Xu, J. R., Pan, H. Q., Read, N.D., Lee, Y. H., Carbone, I., Brown, D., Oh, Y. Y., Donofrio, N., Jeong,J. S., Soanes, D. M., Djonovic, S., Kolomiets, E., Rehmeyer, C., Li, W. X., Harding, M., Kim, S., Lebrun, M. H., Bohnert, H., Coughlan, S.,Butler, J., Calvo, S., Ma, L. J., Nicol, R., Purcell, S., Nusbaum, C.,Galagan, J. E. and Birren, B. W. 2005. The genome sequence of therice blast fungus Magnaporthe grisea. Nature 434:980-986.
  • Conant, G. C. and Wolfe, K. H. 2008. Turning a hobby into a job: Howduplicated genes find new functions. Nature Rev. Genet. 9:938-950.
  • Choi, J., Cheong, K., Jung, K., Jeon, J., Lee, G. W., Kang, S., Kim, S., Lee, Y.W. and Lee, Y. H. 2013. CFGP 2.0: a versatile web-based platform forsupporting comparative and evolutionary genomics of fungi and89Oomycetes. Nucleic Acids Res. 41:D714-D719.
  • Chi, M. H., Park, S. Y. and Lee, Y. H. 2009. A quick and safe method forfungal DNA extraction. Plant Pathol. J. 25:108-111.
  • Carvunis, A. R., Rolland, T., Wapinski, I., Calderwood, M. A., Yildirim, M. A.,Simonis, N., Charloteaux, B., Hidalgo, C. A., Barbette, J., Santhanam,B., Brar, G. A., Weissman, J. S., Regev, A., Thierry-Mieg, N., Cusick,M. E. and Vidal, M. 2012. Proto-genes and de novo gene birth. Nature487:370-374.
  • Cai, J., Zhao, R. P., Jiang, H. F. and Wang, W. 2008. De novo origination of anew protein-coding gene in Saccharomyces cerevisiae. Genetics179:487-496.
  • Begun, D. J., Lindfors, H. A., Kern, A. D. and Jones, C. D. 2007. Evidence forde novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade. Genetics 176:1131-1137.
  • Alba, M. M. and Castresana, J. 2007. On homology searches by protein Blastand the characterization of the age of genes. BMC Evol. Biol. 7:53.