박사

SNP 마커를 이용한 고추 유전자 지도 작성 및 매운맛, 적색소 함량 연관 QTL 분석

김정호 2015년
논문상세정보
    • 저자 김정호
    • 기타서명 QTL Mapping Related to Pungency and Red Color Levels Using SNP markers in Chili Pepper(Capsicum annuum.L.)
    • 형태사항 26 cm: 삽도: ix, 112 L.
    • 일반주기 강원대학교 논문은 저작권에 의해 보호받습니다, 지도교수:강원희, 참고문헌 : L.97-108
    • 학위논문사항 학위논문(박사)-, 원예학과, 2015. 2, 강원대학교 대학원 일반대학원
    • KDC 524.66, 5
    • 발행지 춘천
    • 언어 kor
    • 출판년 2015
    • 발행사항 강원대학교 대학원 일반대학원
    • 주제어 QTL mapping 고추 매운맛 적색소
' SNP 마커를 이용한 고추 유전자 지도 작성 및 매운맛, 적색소 함량 연관 QTL 분석' 의 주제별 논문영향력
논문영향력 선정 방법
논문영향력 요약
주제
  • qtl mapping
  • 고추
  • 매운맛
  • 적색소
동일주제 총논문수 논문피인용 총횟수 주제별 논문영향력의 평균
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' SNP 마커를 이용한 고추 유전자 지도 작성 및 매운맛, 적색소 함량 연관 QTL 분석' 의 참고문헌

  • Zygier S, Ben Chaim A, Efrati A, Kaluzky G, Borovsky Y, Paran I. 2005. QTL mapping offruit size and shape in chromosomes 2 and 4 in pepper and comparison of QTL maps withtomato.Theor Appl Genet 111:437?445.
  • You, F.M. 2011. Annotation-based genome-wide SNP discovery in the large and complexAegilops tauschii genome using next-generation sequencing without a reference genomesequence. BMC Genomics 12, 59.
  • WuSB, Wirthensohn MG, Hunt P, Gibson JP, SedgleyM. 2008. High resolution meltinganalysis of almond SNPs derived from ESTs. Theor. Appl. Genet. 118, 1?14.
  • Wu, X., Ren, C., Joshi, T., Vuong, T., Xu, D., Nguyen, H.T., 2010. SNP discovery byhighthroughput sequencing in soybean. BMC Genomics 11, 469.
  • Wittwer CT, Reed GH, Gundry CN, Vandersteen JG, Pryor RJ. 2003. High-resolutiongenotyping by amplicon melting analysis using LCGreen. Clin. Chem. 49, 853?860.
  • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL. 2008. Rapidtranscriptome characterization for a nonmodel organism using 454 pyrosequencing. MolEcol 17: 1636?47.
  • Van Tassell, C.P. 2008. SNP discovery and allele frequency estimation by deep sequencingof reduced representation libraries. Nat. Methods 5, 247?252.
  • Truong, H.T. 2010. Comparative mapping of consensus SSR markers in an intraspecific F8recombinant inbred line population in Capsicum. Hortic. Environ. Biotechnol. 51 (3), 193?206.
  • Todd PH, Bensinger MG, Bifitu T. 1977. Determination of pungency due to capsicum bygas-liquid chromatography. J. Food Sci. 42:660-665.
  • Thorup, T.A., B. Tanyolac, K.D. Livingstone, S. Popovsky, I. Paran, M. Jahn. 2000.
  • Sloan, D.B., Keller, S.R., Berardi, A.E., Sanderson, B.J., Karpovich, J.F., Taylor, D.R. 2012.
  • Sheh MT, Corinne M, Aat V, Marcel K, Stephen R, Marie-Angele G. 2005. Comparativeanalyses of genetic diversities within tomato and pepper collections detected byretrotransposon-based SSAP, AFLP and SSR. Theor Appl Genet. 110: 819?831.
  • S.I. Kim, M.K. Park, S.I. Yeom, Y.M. Kim, J.M. Lee, H.A. Lee, E.Y. Seo, J Choi, K.C. Cheong,K.T. Kim, K.J. G.W. Lee, S.K. Oh, C.B, S.B. Kim, H.Y. Lee, S.Y. Kim, M.S. Kim, B.C. Kang,Y.D. Jo, H.B. Yang, H.J. Jeong, W.H. Kang, J.K. Kwon, C Shin, J.Y. Lim, J.H. Park, J.H. Huh,J.S. Kim, B.D. Kim, Oded Cohen, Ilan Paran, M.C. Suh, S.B. Lee, Y.K. Kim, Y.h Shin, S.J. Noh,J.H. Park, Y.S. Seo, S.Y. Kwon, H.A. Kim, J.M. Park, H.J. Kim, S.B.Choi, Paul W Bosland,Gregory Reeves, S.H. Jo, B.W. Lee, H.T. Cho, H.S. Choi, M.S. Lee, Y.S. Yu, Y.D. Choi, B.S.
  • S.H. Ha, J.B. Kim, J.S. Park, S.W.Lee, K.J. Cho. 2007. A comparison of the carotenoidaccumulation in Capsicum varieties that show different ripening colours : deletion of thecapsanthin-capsorubin synthase gene is not a prerequisite for the formation of a yellowpepper. J.E.B. 58(12): 3135-3144.
  • RafalskiJA, VogelJM, MorganteM, PowellW, AndreC, Tingey SV. 1996. GeneratingandusingDNA markersinplants.In:BirrenB, LaiE (eds),Non-mammalian genomic analysis.A105practicalguide. AcademicPress,SanDiego,75-134.
  • RafalskiA. 2002. Applications ofsingle nucleotide polymorphisms in cropgenetics. CurrentOpinion in Plant Biology5:94-100Rao GU, Ben Chaim A, Borovsky E, I. Paran. 2003. Mapping of yield-related QTLs inpepper in an interspecific cross of Capsicum annuum and C. frutescens. Theor Appl Genet106:1457?1466.
  • Prince, J.P., Lackney, V.K., Angeles, C., Blauth, J.R., Kyle, M.M., 1995. A survey of DNApolymorphism within the genus Capsicum and the fingerprinting of pepper cultivars. Genome 38, 224?231.
  • Peterson, P.A. 1959. Linkage of fruit shape and color genes in capsicum. Genetics 44:417-419.
  • Perry, L., Dickau, R., Zarrillo, S., Holst, I., Pearsall, D.M., Piperno, D.R., Berman, .J., Cooke,R.G., Rademaker, K., Ranere, A.J. 2007. Starch fossils and the domestication and dispersalof chili peppers (Capsicum spp. L.) in the Americas. Science. 315, 986-988.
  • Paterson, A.H., E.S. Lander, J.D. Hewitt, S. Peterson, S.E. Lincoln. S.D. Tranksley. 1988.
  • Park, Allen van Deynze, Hamid Ashrafi, Theresa Hill, W.T. Kim, H.S. Pai, H.K. Ahn, I.H. Yeam, James J Giovannoni, Jocelyn K C Rose, Iben S? rensen, S.J. Lee, R.W. Kim, I.Y. Choi,B.S. Choi, J.S. Lim, Y.H. Lee, D.I. Choi. 2014. Genome sequence of the hot pepper providesinsights into the evolution of pungency in Capsicum species. Nature Genetics. 46(3):270-279
  • Paran, I. R.W. Michelmore. 1993. Development of reliable PCR-based markers linked todowney mildew resistance genes in lettuce. Theor.Appl. Genet. 85:985-993.
  • Paran, I. 2004. An integrated genetic linkage map of pepper (Capsicum spp.). Mol. Breed. 13 (3), 251?261.
  • Novaes, E. 2008. High-throughput gene and SNP discovery in Eucalyptus grandis, anuncharacterized genome. BMC Genomics 9, 312.
  • Loaiza-Figueroa, F. Tanksley SD. 1988. Genetics of a second locus determining pungencyin chilli peppers(Capsicum).J. Hered. 79:314-315.
  • Livingstone, K. D., Lackney, V. K., Blauth, J. R., van Wijk, R., Jahn, M. K. 1999. Genomemapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics152, 1183?1202. McDowell, E.T. 2011. Comparative functional genomic analysis of Solanum glandulartrichome types. Plant Physiol. 155, 524?539.
  • Lefebvre, V., Pflieger, S., Thabuis, A., Caranta, C., Blattes, A. 2002. Towards the saturationof the pepper linkage map by alignment of three intraspecific maps including knownfunctiongenes. Genome 45, 839?854.
  • Lefebvre, V., Palloix, A., Caranta, C., Pochard, E. 1995. Construction of an intraspecificintegrated linkage map of pepper using molecular markers and doubled-haploid progenies. Genome 38, 112?121.
  • Lefebvre, V. 2001. Evaluation of genetic distances between pepper inbred lines for cultivarprotection purposes: comparison of AFLP, RAPD and phenotypic data. Theor. Appl. Genet. 102, 741?750.
  • Lefebvre V, Palloix A, Caranta C, Pochard E. 1995. Construction of an intraspecificintegrated linkage map of pepper using molecular markers and doubled-haploid progenies. 103Genome 38, 112?121.
  • Lee H.R., Cho M.C. 2008. Marker development for Erect versus Pendant-Orientated Fruitin Capsicum annuum L. Mol.Cells 26: 548-553.
  • Lee CJ, Yoo EY, Shin HJ, Lee J, Hwang HS, Kim BD. 2005. Non-pungent Capsicumcontains a deletion in the capsaicinoid synthetase gene, which allows early detection ofpungency with SCAR markers. Mol.cells. 19(2):262-267.
  • Lang L.-Q., S. Yanagawa, T. Sasanuma and T. Sasakuma. 2004. Orange fruit color inCapsicum due to deletion of capsanthin-capsorubin synthesis gene. Breed. Sci. 54:33-39Li, Y.B., Fan, C.C., Xing, Y.Z., Jiang, Y.H., Luo, L.J., Sun, L., Shao, D., Xu, C.J., Li, X.H., Xiao,J.H. 2011. Natural variation in GS5 plays an important role in regulating grain size and yieldin rice. Nat. Genet. 43, 1266-1269.
  • Kweon, O.Y., Y.K. Kim, J.B. Yoon, H.G. Park, and W.M. Yoon. 2006. Inheritance ofcarotenoids content in red pepper (Capsicum annuum L.) fruit. Kor. J. Hort. Sci. Technol. 24:123-127.
  • Korea Seed & Variety Service. 2008. The method of Surveying Characteristics inPepper(Capsicum spp.). http://www.seed.go.kr.
  • Kloosterman, B., Oortwijn, M., uitdeWilligen, J., America, T., de Vos, R., Visser, R.,102Bachem, C. 2010. From QTL to candidate gene: genetical genomics of simple and complextraits in potato using a pooling strategy. BMC Genomics 11, 158.
  • Kim. 2001. An interspecific (Capsicum annuum x C. chinenese) F2 linkage map in pepperusing RFLP and AFLP markers. Theor. Appl.Genet. 102:531-539.
  • Kim, S., J. B. Park, I. K. Hwang. 2004. Composition of main carotenoids in Korean redpepper (Capsicum annuum L.) and changes of pigment stability during the drying andstorage process. J. Food Sci.69:39-44.
  • Kim, D.S., Kim, D.H., Yoo, J.H., Kim, B.D., 2006. Cleaved amplified polymorphic sequenceand amplified fragment length polymorphism markers linked to the fertility restorer gene inchili pepper (Capsicum annuum L.). Mol. Cells 21 (1), 135?140.
  • Kim M. W. 2000. Molecular cloning and expression analysis of cDNA clones deferentiallyexpressed in placenta of pungent and nonpungent pepper. Thesis for the degree of M.S.inSeoul National University.
  • Karayatsubusa at different growth stage after flowering. Agric. Biol. Chem. 43:2493-2496.
  • Kang, B. C., Nahm, S. H., Huh, J. H., Yoo, H. S., Lee, M. H. 2001. Combined molecularlinkage map construction using RFLP and AFLP in hot pepper. Theor. Appl. Genet. 102,531?539.
  • K.Semagn, A.Bjornstad, M.N.Ndjiondjop. 2006. Principles, requirements and prospects ofgenetic mapping in plants. African J.Biotechnology 5(25):2569-2587.
  • Iwai, K.,T.Suzuki, H. Fujiwake. 1979. Formation and accumulation of pungent principle ofhot pepper fruits, capsaicin and its analogues in Capsicum annumm var. annuum cv.
  • Ilan, P., J.R. van der Voort, V. Lefebre, M. Jahn, L. Landry, M. van Schriek, B. Tanyolac, C. Caranta, A. Ben Chaim, K. Livingstone, A. Palloix. J. Peleman. 2004. An intergrated genetic101linkage map of pepper (Capsicum spp.). Molecular Breeding 13:251-261.
  • Huh, J.H., B.C. Kang, S.H. Nahm, S. Kim, K.S. Ha, M.H. Lee, B.D. Kim. 2001. A candidategene approach identified phytoene synthase as the locus for mature fruit color in redpepper (Capsicum spp.). Theor.Appl. Genet. 102:524-530Hurtado-Hernandez, H., P.G.Smith. 1985. Inheritance of mature fruit color in Capsicumannuum L. J. Hered. 76: 211-213.
  • Hong SH. 1996. The situations of quality control system for red pepper powder in Koreaand American. J. Kor. Capsicum Res. Coop. 4:93-99.
  • Hong SH. 1995. The situations of quality control system for red-pepper powder in Koreaand America. J. Kor. Capsicum Res. Coop. 4:95-101.
  • Hoffman PG, Lego MC, Galetto WG. 1983. Separation and quantitation of red pepper majorheat principles by reverse high pressure liquid chromatogrphy. J. Agric Food Chem. 31:1326-1330.
  • Ha SH, Kim JB, Park JS, Lee SW, Cho KJ. 2007. A comparison of the carotenoidaccumulation in Capsicum varieties that show different ripening colours : deletion of thecapsanthin-capsorubin synthase gene is not a prerequisite for the formation of a yellowpepper. J.E.B. 58(12): 3135-3144.
  • Govindarajan VS, Sathyanarayana MN. 1 Capsicum-production,technology, chemistry andquality. Part. V. Impact on physiology, pharmacology, nutrition and metabolism, structure,100pungency, pain, and desensitization sequences. Crit Rev Food Sci Nutr. 29(6):435-474.
  • Gordon J, Lightbourn, Robert J, Griesbach, Janet A. Novotny, Beverly A, Clevidence, DavidD, Rao, John R. Stommel. 2008. J. Hered. 99(2) : 105-111.
  • Fujiwake, H., T. Suzuki, K. Iwai. 1980. Intracellular localization of capsaicin andcapsaicinoid in the protoplast of Capsicum fruit. Plant Cell Physiol. 21: 1023-1030Garg, R., Patel, R.K., Tyagi, A.K., Jain,M., 2011. De novo assembly of chickpeatranscriptome using short reads for gene discovery and marker identification. DNA Res. 1,11.
  • Deshpande, R.B. 1934. Studies in Indian chillies: (4) Inheritance of pungency in Capsicumannuum L. Ind. Jour. Agr. Sci. 5:513-516.
  • De novo transcriptome assembly and polymorphism detection in the flowering plant Silenevulgaris (Caryophyllaceae). Mol. Ecol. Resour. 12 (2), 333?343.
  • Davis,G.H., S. Mathews, J.T. Kirk. 1970. The nature and biosynthesis of the carotenoids ofdifferent colour varieties of Capsicum annuum. Phytochemistry 9:797-805.
  • Curl. A.L. 1964. The carotenoids of green bell peppers. J. Agr. Food Chem. 12:522-526.
  • Curl, A.L. 1962. The carotenoids of red bell peppers. J. Agr. Food Chem. 10:504-509.
  • Chung KM, Hwang JM. 2002. Quality of single-harvested red peppers by harvest time andfruit grade. Kor. J. Food Sci. Technol. 34(5): 919-923.
  • Cho BC, Park KW, Kang HM, Lee WM, Choe JS. 2004. Correlationship betweengrowing periods. J. Kor. Bio-Environ. Cont. 13(2):67-72.
  • Charles S, Kang BC, Kede Liu, Mazourek M, Shanna LM, Yoo EY, Kim BD, Paran I, Jahn M. 2005. The Pun1 gene for pungency in pepper encodes a putative acyltransferase. The PlantJournal. 42:675-688.
  • Candidate gene analysis of organ pigmentation loci in the Solanaceae. Proc. Natl. Acad. Sci. USA 97:11192-11197.
  • Blum E, Mazourek M, O ?Connell M, Curry J, Thorup T, Liu K, Jahn M, Paran I. 2003. Molecular mapping of capsaicinoid biosynthesis genes and QTL analysis for capsaicinoidcontent in Capsicum. Theor. Appl. Genet. 108:79?86.
  • Binod p. , TJ Lee, WH Kang. 2011. Variation for Fruit Yield and Quality characteristics inSweet pepper(Capsicum annuum L.) Germplasm collection. Kor.J.Breed.Sci. 43(2) : 139-144(2011)Blum, E., Liu, K., Mazourek, M., Yoo, E. Y., Jahn, M. 2002. Molecular mapping of the C locusfor presence of pungency in Capsicum. Genome 45, 702?705.
  • Bennet, D.J. G.W.Kirby. 1968. Constitution and biosynthesis of capsaicin. J.Chem.Soc.442-446.
  • Ben Chaim A, Paran I. 2000. Genetic analysis of quantitative traits in pepper (Capsicumannuum). Proc Am Soc Hortic Sci 125:66?70.
  • Ben Chaim A, Paran I, Grube R, Jahn M, van Wijk R, Peleman J.2001. QTL mapping of fruitrelated traits in pepper (Capsicum annuum). Theor. Appl. Genet. 102:1016?1028.
  • Ben Chaim A, Borovsky Y, Falise M, Mazourek M, Kang BC, Paran I, Jahn M. 2006. QTLanalysis for capsaicinoid content in Capsicum. Theor Appl Genet 113:1481?1490.
  • Ben Chaim A, Borovsky Y, De Jong W, Paran I. 2003. Linkage of the A locus for the98presence of anthocyanin and fs10.1, a major fruit-shape QTL in pepper. Theor Appl Genet106:889?894.
  • B.D.Kim, H.G.Park, Y.H.Kim. 2004. Molecular Genetics and Breeding of Chili Pepper inKorea. Center for Plant Molecular Genetics and Breeding Research. Seoul NationalUniversity. 3-21.
  • Andrews, J. 1995. Peppers, The Domesticated Capsicums. University of Texas Press,Austin.
  • Akiyama H, Nakamura F, Yamada C, Nakamura K, Nakajima O, Kawakami H, Harikai N,Furui S, Kitta K, Teshima R. 2009. A screening method for the detection of the 35Spromoter and the nopaline synthase terminator in genetically modified organisms in a realtimemultiplex polymerase chain reaction using high-resolution melting-curve analysis. Biol. Pharm. Bull. 32, 1824?1829.
  • 99Croxford AE, Rogers T, Caligari PD, Wilkinson MJ. 2008. Highresolution melt analysis toidentify and map sequence-tagged site anchor points onto linkage maps: a white lupin(Lupinus albus) map as an exemplar. New Phytol. 180, 594?607.
  • 107White HE, Hall VJ, Cross NC. 2007. Methylation-sensitive highresolution melting-curveanalysis of the SNRPN gene as a diagnostic screen for Prader-Willi and Angelmansyndromes. Clin. Chem. 53, 1960?1962.
  • 106Shin HH, Lee SR. 1991. Quality atrributes of korean red pepper according to cultivars andgrowing areas. Kor. J. Food Sci. Technol. 23(3):296-300.
  • 104Mian, M.A.R., Kang, S.T., Beil, S.E., Hammond, R.B., 2008. Genetic linkage mapping of thesoybean aphid resistance gene in PI 243540. Theor. Appl. Genet. 117 (6), 955?962.